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Large-Scale First-Principles Molecular Dynamics Simulations on the BlueGene/L Platform using the Qbox Code
Session:
Chemistry and Materials Science
Event Type:
Paper, Gordon Bell Finalist
Time:
4:30pm - 5:00pm
Session Chair
:
Brett M Bode
Speaker(s)
:
Francois Gygi, Erik W. Draeger, Bronis R. de Supinski, Robert K. Yates, Franz Franchetti, Stefan Kral, Juergen Lorenz, Christoph W. Ueberhuber, John A. Gunnels, James C. Sexton
Location:
606-607
Abstract:
We present the first results of First-Principles Molecular Dynamics (FPMD) simulations performed with the Qbox code on the BlueGene/L supercomputer at the Lawrence Livermore National Laboratory. Simulations were performed on up to 32768 nodes of BlueGene/L and are the first FPMD calculations carried out on that scale. Performance measurements yield a strong scaling efficiency of 86% when scaling from 1024 CPUs to 32768 CPUs. The fraction of floating point performance achieved reaches 37% on 4096 CPUs and 24% on 32768 CPUs, corresponding to a sustained performance of 22 TFlops. This application demonstrates for the first time that the large computing power provided by the BlueGene/L computer can be efficiently utilized to perform accurate first-principles molecular dynamics simulations. The wide applicability of FPMD makes this first demonstration relevant to physics, chemistry, biochemistry and nanoscience applications.
This paper can be found in the ACM and IEEE Digital Libaries
Click here for ACM
Click here for IEEE
Chair/Speaker Details:
Brett M Bode (Chair)
Ames Laboratory
Francois Gygi
Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, Livermore, CA 94551
Erik W. Draeger
Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, Livermore, CA 94551
Bronis R. de Supinski
Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, Livermore, CA 94551
Robert K. Yates
Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, Livermore, CA 94551
Franz Franchetti
Department of Electrical and Computer Engineering, Carnegie Mellon University
Stefan Kral
Institute of Analysis and Scientific Computing, Vienna University of Technology, Vienna, Austria
Juergen Lorenz
Institute of Analysis and Scientific Computing, Vienna University of Technology, Vienna, Austria
Christoph W. Ueberhuber
Institute of Analysis and Scientific Computing, Vienna University of Technology, Vienna, Austria
John A. Gunnels
IBM Thomas J. Watson Research Center, Yorktown Heights, NY
James C. Sexton
IBM Thomas J. Watson Research Center, Yorktown Heights, NY
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