Hundreds of thousands of hours of research described by more than 600 authors in 260 paper submissions, reviewed by a committee of 248 of their peers to select the 62 best papers to be presented in only 31 hours at SC|05. Of the 62 accepted papers, 3 have been nominated for the Gordon Bell Prize to recognize outstanding achievement in high-performance computing; another 3 paper submissions were also nominated! for this prize. Also 4 of the 62 papers were nominated for Best Student Paper and 4 more were nominated for SC|05 Best Paper.

Please direct questions to: papers@sc05.supercomputing.org

Time		Session		Event		Chair/Speaker		Location
10:30AM - 11:00AM		High End Computing Technologies		A Power-Aware Run-Time System for High-Performance Computing		John L Gustafson (Chair), Chung-Hsing Hsu, Wu-chun Feng		606-607
10:30AM - 11:00AM		Applications		Scalable Parallel Octree Meshing for Terascale Applications		William Douglas Gropp (Chair), Tiankai Tu, David R. O'Hallaron, Omar Ghattas		602-604
10:30AM - 11:00AM		Cluster Environments		The MHETA Execution Model for Heterogeneous Clusters		Dongyan Xu (Chair), Mario Nakazawa, David K. Lowenthal, Wenduo Zhou		608-609
11:00AM - 11:30AM		High End Computing Technologies		High Performance Linear Algebra Operations on Reconfigurable Systems		John L Gustafson (Chair), Ling Zhuo, Viktor K. Prasanna		606-607
11:00AM - 11:30AM		Applications		Is 1.7x10^10 Unknowns the Largest Finite Element System That Can Be Solved Today?		William Douglas Gropp (Chair), Benjamin Karl Bergen, Frank Huelsemann, Ulrich Ruede		602-604
11:00AM - 11:30AM		Cluster Environments		VSched: Mixing Batch and Interactive Virtual Machines Using Periodic Real-time Scheduling		Dongyan Xu (Chair), Bin Lin, Peter Dinda		608-609
11:30AM - 12:00PM		Applications		Intelligent Feature Extraction and Tracking for Visualizing Large-Scale 4D Flow Simulations		William Douglas Gropp (Chair), Fan-Yin Tzeng, Kwan-Liu Ma		602-604
11:30AM - 12:00PM		High End Computing Technologies		LU-GPU: Efficient Algorithms for Solving Dense Linear Systems on Graphics Hardware		John L Gustafson (Chair), Nico Galoppo, Naga K. Govindaraju, Michael Henson, Dinesh Manocha		606-607
11:30AM - 12:00PM		Cluster Environments		Transparent Incremental Checkpointing at Kernel Level: A Foundation for Fault Tolerance for Parallel Computers		Dongyan Xu (Chair), Roberto Gioiosa, Jose Carlos Sancho, Song Jiang, Fabrizio Petrini, Kei Davis		608-609
1:30PM - 2:00PM		Bioscience		Full Electron Calculation Beyond 20,000 Atoms: Ground Electronic State of Photosynthetic Proteins		Srinivas Aluru (Chair), Tsutomu Ikegami, Toyokazu Ishida, Dmitri G. Fedorov, Kazuo Kitaura, Yuichi Inadomi, Hiroaki Umeda, Mitsuo Yokokawa, Satoshi Sekiguchi		602-604
1:30PM - 2:00PM		Optimizing Compilers		Integrated Loop Optimizations for Data Locality Enhancement of Tensor Contraction Expressions		Jeffrey K. Hollingsworth (Chair), Swarup Kumar Sahoo, Sriram Krishnamoorthy, Rajkiran Panuganti, P Sadayappan		608-609
1:30PM - 2:00PM		Optical-Electronic Networking		On the Feasibility of Optical Circuit Switching for High Performance Computing Systems		Srinidhi Varadarajan (Chair), Kevin J. Barker, Alan Benner, Ray Hoare, Adolfy Hoisie, Alex K. Jones, Darren J. Kerbyson, Dan Li, Rami Melhem, Ram Rajamony, Eugen Schenfeld, Shuyi Shao, Craig Stunkel, Peter A. Walker		606-607
2:00PM - 2:30PM		Optical-Electronic Networking		Analyzing Ultra-Scale Application Communication Requirements for a Reconfigurable Hybrid Interconnect		Srinidhi Varadarajan (Chair), John Shalf, Shoaib Kamil, Leonid Oliker, David Skinner		606-607
2:00PM - 2:30PM		Optimizing Compilers		Automatic Tuning of Inlining Heuristics		Jeffrey K. Hollingsworth (Chair), John Cavazos, Michael F.P. O'Boyle		608-609
2:00PM - 2:30PM		Bioscience		ClawHMMer: A Streaming HMMer-Search Implementation		Srinivas Aluru (Chair), Daniel Reiter Horn, Mike Houston, Pat Hanrahan		602-604
2:30PM - 3:00PM		Bioscience		Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology		Srinivas Aluru (Chair), Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova		602-604
2:30PM - 3:00PM		Optimizing Compilers		Making Sequential Consistency Practical in Titanium		Jeffrey K. Hollingsworth (Chair), Amir Ashraf Kamil, Jimmy Zhigang Su, Katherine Anne Yelick		608-609
2:30PM - 3:00PM		Optical-Electronic Networking		Viable Opto-electronic HPC Interconnect Fabrics		Srinidhi Varadarajan (Chair), Ronald Luijten, Cyriel Minkenberg, Roe Hemenway, Michael Sauer, Richard Grzybowski		606-607
3:30PM - 4:00PM		Web Services		A Benchmark Suite for SOAP-based Communication in Grid Web Services		Keith R. Jackson (Chair), Michael R. Head, Madhusudhan Govindaraju, Aleksander Slominski, Pu Liu, Nayef Abu-Ghazaleh, Robert van Engelen, Kenneth Chiu, Michael J. Lewis		602-604
3:30PM - 4:00PM		Chemistry and Materials Science		Calibrating Quantum Chemistry: A Multi-teraflop, Parallel-vector, Full-configuration Interaction Program for the Cray-X1		Brett M Bode (Chair), Zhengting Gan, Robert Harrison		606-607
4:00PM - 4:30PM		Web Services		Alternative Software Stacks for OGSA-based Grids		Keith R. Jackson (Chair), Marty Humphrey, Glenn Wasson, Yuliyan Kiryakov, Sang-Min Park, David Del Vecchio, Norm Beekwilder, Jim Gray		602-604
4:00PM - 4:30PM		Chemistry and Materials Science		Multilevel Parallelism in Computational Chemistry using Common Component Architecture and Global Arrays		Brett M Bode (Chair), Manojkumar Krishnan, Yuri Alexeev, Theresa L. Windus, Jarek Nieplocha		606-607
4:30PM - 5:00PM		Web Services		Differential Deserialization for Optimized SOAP Performance		Keith R. Jackson (Chair), Nayef Abu-Ghazaleh, Michael J. Lewis		602-604
4:30PM - 5:00PM		Chemistry and Materials Science		Large-Scale First-Principles Molecular Dynamics Simulations on the BlueGene/L Platform using the Qbox Code		Brett M Bode (Chair), Francois Gygi, Erik W. Draeger, Bronis R. de Supinski, Robert K. Yates, Franz Franchetti, Stefan Kral, Juergen Lorenz, Christoph W. Ueberhuber, John A. Gunnels, James C. Sexton		606-607
Time		Session		Event		Chair/Speaker		Location
10:30AM - 11:00AM		System Performance Evaluation		A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L		Jeffrey Vetter (Chair), Andy Yoo, Edmond Chow, Keith Henderson, William McLendon, Bruce Hendrickson, Umit Catalyurek		602-604
10:30AM - 11:00AM		High End Systems Issues		Partitioning Hardware and Software for Reconfigurable Supercomputing Applications: A Case Study		Andy White (Chair), Justin L Tripp, Anders A Hansson, Maya Gokhale, Henning S Morveit		606-607
10:30AM - 11:00AM		MPI and Network Transport		SCTP versus TCP for MPI		Scott Pakin (Chair), Humaira Kamal, Brad Penoff, Alan Wagner		608-609
11:00AM - 11:30AM		System Performance Evaluation		An Application-Based Performance Characterization of the Columbia Supercluster		Jeffrey Vetter (Chair), Rupak Biswas, M. Jahed Djomehri, Robert Hood, Haoqiang Jin, Cetin Kiris, Subhash Saini		602-604
11:00AM - 11:30AM		High End Systems Issues		MegaProto: 1 TFlops/10 kW Rack Is Feasible Even with Only Commodity Technology		Andy White (Chair), Hiroshi Nakashima, Hiroshi Nakamura, Mitsuhisa Sato, Taisuke Boku, Satoshi Matsuoka, Daisuke Takahashi, Yoshihiko Hotta		606-607
11:00AM - 11:30AM		MPI and Network Transport		Supporting Configurable Congestion Control in Data Transport Services		Scott Pakin (Chair), Yunhong Gu, Robert Grossman		608-609
11:30AM - 12:00PM		MPI and Network Transport		Design and Implementation of Multiple Fault-Tolerant MPI over Myrinet		Scott Pakin (Chair), Hyungsoo Jung, Dongin Shin, Hyuck Han, Jai W. Kim, Heon Y. Yeom, Jongsuk Lee		608-609
11:30AM - 12:00PM		High End Systems Issues		Fault Tolerance Techniques for the Merrimac Streaming Supercomputer		Andy White (Chair), Mattan Erez, Nuwan Jayasema, Timiothy J. Knight, William J. Dally		606-607
3:30PM - 4:00PM		Power and Programmability		Just-in-Time Dynamic Voltage Scaling: Exploiting Inter-node Slack to Save Energy in MPI Programs		Wu Feng (Chair), Nandani Kappiah, Vince W. Freeh, David K. Lowenthal		611-614
3:30PM - 4:00PM		Scheduling		Profitable services in an uncertain world		Marty A Humphrey (Chair), Florentina I Popovici, John Wilkes		602-604
3:30PM - 4:00PM		High End Computing Applications		Tera-Scalable Algorithms for Variable-Density Elliptic Hydrodynamics with Spectral Accuracy		Esmond G Ng (Chair), Andrew W. Cook, William H. Cabot, Michael L. Welcome, Peter L. Williams, Brian J. Miller, Bronis R. de Supinski, Robert K. Yates		606-607
4:00PM - 4:30PM		High End Computing Applications		High Resolution Aerospace Applications using the NASA Columbia Supercomputer		Esmond G Ng (Chair), Dimitri J. Mavriplis, Michael J. Aftosmis, Marsha Berger		606-607
4:00PM - 4:30PM		Power and Programmability		Performance-constrained, Distributed DVS Scheduling for Scientific Applications on Power-aware Clusters		Wu Feng (Chair), Rong Ge, Xizhou Feng, Kirk W. Cameron		611-614
4:00PM - 4:30PM		Scheduling		Scheduling speculative tasks in a compute farm		Marty A Humphrey (Chair), David Petrou, Garth A. Gibson, Gregory R. Ganger		602-604
4:30PM - 5:00PM		Scheduling		DI-GRUBER: A Distributed Approach for Grid Resource Brokering		Marty A Humphrey (Chair), Catalin Lucian Dumitrescu, Ioan Raicu, Ian Foster		602-604
4:30PM - 5:00PM		High End Computing Applications		Leading Computational Methods on Scalar and Vector HEC Platforms		Esmond G Ng (Chair), Leonid Oliker, Jonathan Carter, Michael Wehner, Andrew Canning, Stephane Ethier, Bala Govindasamy, Art Mirin, David Parks, Pat Worley, Shigemune Kitawaki, Yoshinori Tsuda		606-607
4:30PM - 5:00PM		Power and Programmability		Parallel Programmer Productivity: A Case Study of Novice Parallel Programmers		Wu Feng (Chair), Lorin Hochstein, Jeff Carver, Forrest Shull, Sima Asgari, Victor R. Basili, Jeffrey K. Hollingsworth, Marvin V. Zelkowitz		611-614
Time		Session		Event		Chair/Speaker		Location
10:30AM - 11:00AM		Performance Prediction and Analysis		Integrating Database Technology with Comparison-based Parallel Performance Diagnosis: The PerfTrack Performance Experiment Management Tool		Satoshi Matsuoka (Chair), Karen L. Karavanic, John May, Kathryn Mohror, Brian Miller, Kevin Huck, Rashawn Knapp, Brian Pugh		606-607
10:30AM - 11:00AM		Large Data Applications		Optimized Data Loading for a Multi-Terabyte Sky Survey Repository		Dave Turner (Chair), Y. Dora Cai, Ruth Aydt, Robert J. Brunner		602-604
10:30AM - 11:00AM		Collective and Group Communication		Performance Modeling and Tuning Strategies of Mixed Mode Collective Communications		Dhabaleswar K. (DK) Panda (Chair), Meng-Shiou Wu, Ricky A. Kendall, Zhao Zhang, Kyle Wright		608-609
11:00AM - 11:30AM		Performance Prediction and Analysis		Cross-Platform Performance Prediction of Parallel Applications Using Partial Execution		Satoshi Matsuoka (Chair), Leo T. Yang, Xiaosong Ma, Frank Mueller		606-607
11:00AM - 11:30AM		Large Data Applications		Dynamic Data-Driven Inversion for Terascale Simulations: Real-Time Identification of Airborne Contaminants		Dave Turner (Chair), Volkan Akcelik, George Biros, Andrei I. Draganescu, Omar Ghattas, Judith C. Hill, Bart van Bloemen Waanders		602-604
11:00AM - 11:30AM		Collective and Group Communication		Optimizing All-to-All Collective Communication by Exploiting Concurrency in Modern Networks		Dhabaleswar K. (DK) Panda (Chair), Vinod Tipparaju, Jarek Nieplocha		608-609
11:30AM - 12:00PM		Large Data Applications		16.447 TFlops and 159-Billion-dimensional Exact-diagonalization for Trapped Fermion-Hubbard Model on the Earth Simulator		Dave Turner (Chair), Susumu Yamada, Toshiyuki Imamura, Masahiko Machida		602-604
11:30AM - 12:00PM		Collective and Group Communication		Balanced Multicasting: High-throughput Communication for Grid Applications		Dhabaleswar K. (DK) Panda (Chair), Mathijs den Burger, Thilo Kielmann, Henri E. Bal		608-609
11:30AM - 12:00PM		Performance Prediction and Analysis		PerfExplorer: A Performance Data Mining Framework For Large-Scale Parallel Computing		Satoshi Matsuoka (Chair), Kevin A. Huck, Allen D. Malony		606-607
1:30PM - 2:00PM		Performance Characterization		How Well Can Simple Metrics Represent the Performance of HPC Applications?		Kirk W Cameron (Chair), Laura C. Carrington, Allan E. Snavely, Michael Laurenzano, Roy L. Campbell Jr., Larry P. Davis		602-604
1:30PM - 2:00PM		Grid Infrastructure		Identity Boxing: A New Technique for Consistent Global Identity		Ann L Chervenak (Chair), Douglas Thain		606-607
2:00PM - 2:30PM		Performance Characterization		Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms		Kirk W Cameron (Chair), Erich Strohmaier, Hongzhang Shan		602-604
2:00PM - 2:30PM		Grid Infrastructure		GLARE: A Grid Activity Registration, Deployment and Provisioning Framework		Ann L Chervenak (Chair), Mumtaz Siddiqui, Alex Villazon, Juergen Hofer, Thomas Fahringer		606-607
2:30PM - 3:00PM		Grid Infrastructure		Massive High-Performance Global File Systems for Grid Computing		Ann L Chervenak (Chair), Phil Andrews, Patricia Kovatch, Christopher Jordan		606-607
2:30PM - 3:00PM		Performance Characterization		Quantifying Locality In The Memory Access Patterns of HPC Applications		Kirk W Cameron (Chair), Jonathan Weinberg, Allan Snavely, Michael O. McCracken, Erich Strohmaier		602-604
3:30PM - 4:00PM		Performance Optimization		Parallel Parameter Tuning for Applications with Performance Variability		Beth Simon (Chair), Vahid Tabatabaee, Ananta Tiwari, Jeffrey K. Hollingsworth		606-607
3:30PM - 4:00PM		Storage and Data		The Globus Striped GridFTP Framework and Server		Erik Riedel (Chair), William Allcock, John Bresnahan, Rajkumar Kettimuthu, Michael Link, Catalin Dumitrescu, Ioan Raicu, Ian Foster		602-604
4:00PM - 4:30PM		Storage and Data		Separating Abstractions from Resources in a Tactical Storage System		Erik Riedel (Chair), Douglas Thain, Sander Klous, Justin Wozniak, Paul Brenner, Aaron Striegel, Jesus Izaguirre		602-604
4:00PM - 4:30PM		Performance Optimization		Transformations to Parallel Codes for Communication-Computation Overlap		Beth Simon (Chair), Anthony Danalis, Ki-Yong Kim, Lori Pollock, Martin Swany		606-607
4:30PM - 5:00PM		Storage and Data		FreeLoader: Scavenging Desktop Storage Resources for Scientific Data		Erik Riedel (Chair), Sudharshan Vazhkudai, Xiaosong Ma, Vincent Freeh, Jonathan Strickland, Nandan Tammineedi, Stephen Scott		602-604
4:30PM - 5:00PM		Performance Optimization		Using Dynamic Tracing Sampling to Measure Long Running Programs		Beth Simon (Chair), Jeffrey Odom, Luiz DeRose, Kattamuri Ekanadham, Jeffrey K. Hollingsworth, Simone Sbaraglia		606-607